dHCP Publications | The Developing Human Connectome Project

2021

- Siân Wilson, Maximilian Pietsch, Lucilio Cordero-Grande, Anthony N. Price, Jana Hutter, Jiaxin Xiao, Laura McCabe, Mary A. Rutherford, Emer J. Hughes, Serena J. Counsell, Jacques-Donald Tournier, Tomoki Arichi, Joseph V. Hajnal, A. David Edwards, Daan Christiaens, and Jonathan O’Muircheartaigh; Development of human white matter pathways in utero over the second and third trimester. PNAS 2021.
- Emer J. Hughes, Anthony N. Price, Laura McCabe, Suzanne Hiscocks, Lara Waite, Elaine Green, Jana Hutter, Kelly Pegoretti, Lucilio Cordero-Grande, David A. Edwards, Joseph V. Hajnal Mary A. Rutherford; The effect of maternal position on venous return for pregnant women during MRI. NMR in Biomedicine 2021.
- Eyre M, Fitzgibbon S.P, Ciarrusta J, Cordero-Grande L, Price A.N, Poppe T, Schuh A, Hughes E, O’Keeffe C, Brandon J, Cromb D, Vecchiato K, Andersson J, Duff E.P, Counsell S.J, Smith S.M, Rueckert D, Hajnal J.V, Arichi T, O’Muircheartaigh J, Batalle D., Edwards, A.D; The Developing Human Connectomme Project: typical and disrupted perinatal functional connectivity; Brain 2021.

2020

Sean P. Fitzgibbon, Samuel J. Harrison, Mark Jenkinson, Luke Baxter, Emma C. Robinson, Matteo Bastiani, Jelena Bozek, Vyacheslav Karolis, Lucilio Cordero Grande, Anthony N. Price, Emer Hughes, Antonios Makropoulos, Jonathan Passerat-Palmbach, Andreas Schuh, Jianliang Gao, Seyedeh Rezvan Farahibozorg,Jonathan O’Muircheartaigh, Judit Ciarrusta, Camilla O’Keeffe, Jakki Brandon, Tomoki Arichi, Daniel Rueckert, Joseph V. Hajnal, A. David Edwards, Stephen M. Smith, Eugene Duff, Jesper Andersson; The developing Human Connectome Project (dHCP) automated resting-state functional processing framework for newborn infants. NeuroImage 2020
Gareth Ball, Jakob Seidlitz, Jonathan O’Muircheartaigh, Ralica Dimitrova, Daphna Fenchel, Antonios Makropoulos, Daan Christiaens, Andreas Schuh, Jonathan Passerat-Palmbach, Jana Hutter, Lucilio Cordero-Grande, Emer Hughes, Anthony Price,J o V. Hajnal,Daniel Rueckert, Emma C. Robinson, A David Edwards; Cortical morphology at birth reflects spatiotemporal patterns of gene expression in the fetal human brain; PLOS Biology 2020.
E.Thompson, A.R.Mohammadi-Nejad, E.C.Robinson, J.L.R.Andersson, S.Jbabdi, M.F.Glassere, M.Bastiania, S.N.Sotiropoulos; Non-negative data-driven mapping of structural connections with application to the neonatal brain; NeuroImage 2020.
Ng IHX, Bonthrone AF, Kelly CJ, Cordero-Grande L, Hughes EJ, Price AN, Hutter J, Victor S, Schuh A, Rueckert D, Hajnal JV, Simpson J, Edwards AD, Rutherford MA, Batalle D, Counsell SJ; Investigating altered brain development in infants with congenital heart disease using tensor-based morphometry; Scientific Reports 2020.
Yassine TaoudiBenchekroun, Daan Christiaens, Irina Grigorescu, Andreas Schuh, Maximilin Pietsch, Andrew Chew, Nicholas Harper, Shona Falconer, Tanya Poppe, Emer Hughes, Jana Hutter, Anthony N Price, J Donald Tournier, Lucilio Cordero-Grande, Serena J Counsell, Daniel Rueckert, Tomoki Arichi, Joseph V Hajnal, A David Edwards, Maria Deprez, Dafnis Batalle; Predicting age and clinical risk from the neonatal connectome; bioRxiv 2020.
Megan Ní Bhroin, Samy Abo Seada, Alexandra F. Bonthrone, Christopher J. Kelly, Daan Christiaens, Andreas Schuh, Maximilian Pietsch, Jana Hutter, J-Donald Tournier, Lucillio Cordero-Grande, Daniel Rueckert, Joseph V. Hajnal, Kuberan Pushparajah, John Simpson, A. David Edwards, Mary A. Rutherford, Serena J. Counsell, Dafnis Batalle; Reduced structural connectivity in cortico-striatal-thalamic network in neonates with congenital heart disease; NeuroImage: Clinical 2020.
Ana A. Baburamani, Regina T. Vontell, Alena Uus, Maximilian Pietsch, Prachi A. Patkee, Jo Wyatt-Ashmead, Evonne C. Chin-Smith, Veena G. Supramaniam, J. Donald Tournier, Maria Deprez & Mary A. Rutherford; Assessment of radial glia in the frontal lobe of fetuses with Down syndrome; Acta Neuropathologica Communications 2020.
Jacques‐Donald Tournier , Daan Christiaens , Jana Hutter , Anthony N. Price , Lucilio Cordero‐Grande , Emer Hughes , Matteo Bastiani , Stamatios N. Sotiropoulos , Stephen M. Smith , Daniel Rueckert , Serena J. Counsell , A. David Edwards , Joseph V. Hajnal; A data‐driven approach to optimising the encoding for multi‐shell diffusion MRI with application to neonatal imaging; NMR in Biomedicine 2020.
Maximilian Pietsch, Daan Christiaens, Joseph V Hajnal, J-Donald Tournier; dStripe: slice artefact correction in diffusion MRI via constrained neural network; bioRxiv 2020.
Alexandra Lautarescu, Suresh Victor, Alex Lau-Zhu, Serena J. Counsell, A. D.avid Edwards,Michael C.Craig; Can the Edinburgh Postnatal Depression Scale be used to screen for anxiety in the perinatal period? A factor analysis of high-risk and community samples; PsyArXiv Preprints 2020.
Fenchel D, Dimitrova R, Seidlitz J, Robinson E.C, Batalle, D, Hutter J, Christiaens D, Pietsch M, Brandon J, Hughes EJ, Allsop J, O’Keeffe C, Price AN, Cordero-Grande L, Schuh A, Makropoulos A, Passerat-Palmbach J, Bozek J, Rueckert D, Hajnal J.V, Raznahan A, McAlonan G, Edwards A.D, O’Muircheartaigh J; Development of Microstructural and Morphological Cortical Profiles in the Neonatal Brain; Cerebral Cortex, 2020.
Ciarrusta J, Dimitrova R, Batalle, D., O’Muircheartaigh J, Cordero-Grande L, Price A.N, Hughes E, Kangas J, Perry E, Javed A, Jill D, Hajnal J.V, Murphy D, Edwards A.D, Arichi T, McAlonan G; Emerging functional connectivity differences in newborn infants vulnerable to Autism Sepectrum Disorders; Translational Psychiatry, 2020.

This paper reports newborn infants with family history of Autism Spectrum Disorders display higher levels of regional homogeneity (ReHo) in multiple functional networks compared to infants with no family history of any psychiatric condition. These results suggest local functional connectivity might follow a different developmental trajectory in individuals with a genetic vulnerability for atypical development. Ciarrusta et al., Translational Psychiatry 2020.

Dimitrova R, Pietsch M, Christiaens D, Ciarrusta J, Wolfers T, Batalle, D, Hughes E, Hutter J, Cordero-Grande L, Price A.N, Chew A, Falconer S, Vecchiato K, Steinweg J.K, Carney O, Rutherford MA, Tournier J-D, Counsell S, Marquand A, Rueckert D, Hajnal J.V, McAlonan G, Edwards, A.D, O’Muircheartaigh J; Heterogenity in brain microstructural development following preterm birth; Cerebral Cortex, 2020.
O’Muircheartaigh J, Robinson E, Pietsch M, Wolfers T, Aljabar P, Cordero-Grande L, Gomez-Teixeira RP, Bozek J, Schuh A, Makropoulos A, Batalle, D., Vecchiato K, Steinweg J.K, Fitzgibbon S, Hughes E, Price A, Marquand A, Reuckert D, Rutherford M, Hajnal J, Counsell S.J, Edwards A.D; Modelling brain development to detect white matter injury in term and preterm born neonates; Brain, 2020.

This work built statistical growth curves of brain development based on anatomical MRI and used these curves to detect subtle brain injuries in individual infants. O’Muircheartaigh et al., Brain 2020.

Cordero‐Grande L, Ferrazzi G, Teixeira R.P, O’Muircheartaigh J, Price A.N, Hajnal J.V. Motion‐corrected MRI with DISORDER: Distributed and incoherent sample orders for reconstruction deblurring using encoding redundancy. Magnetic Resonance in Medicine. 2020.
Fetit A.E, Alansary A, Cordero-Grande L,Cupitt J, Davidson A.B, Edwards A.D, Hajnal J.V, Hughes E, Kamnitsas K, Kyriakopoulou V, Makropoulos A, Patkee P.A, Price A.N, Rutherford M.A, Rueckert D. A deep learning approach to segmentation of the developing cortex in fetal brain MRI with minimal manual labeling. Medical Imaging with Deep Learning, 2020.

This paper presents a deep learning-based system for cortical segmentation of fetal brain MRI, developed with minimal manual labels. Fetit et al., Medical Imaging with Deep Learning 2020.

Fetit A.E, Cupitt J, Kart T, Rueckert D. Training deep segmentation networks on texture-encoded input: application to neuroimaging of the developing neonatal brain. Medical Imaging with Deep Learning, 2020.

This analysis is the first to demonstrate that convolutional neural networks could be trained directly on local textural maps in the complex task of image segmentation of developing human brain tissues. Fetit et al., Medical Imaging with Deep Learning 2020.

Gale-Grant O, Christiaens D, Cordero-Grande L, Chew A, Falconer S, Makropoulos A, Harper N, Price AN, Hutter J, Hughes E, Victor S, Counsel SJ, Rueckert D, Hajnal JV, Edwards AD, O’Muircheartaigh J*, Batalle, D. Parental Age Effects on Neonatal White Matter Development. Neuroimage: Clinical, 2020.

2019

Tournier J.D, Smith R, Raffelt D, Tabbara R, Dhollander T, Pietsch M, Christiaens D, Jeurissen B, Yeh CH, Connelly A., MRtrix3: A fast, flexible and open software framework for medical image processing and visualisation. Neuroimage. 2019.
Cordero-Grande, L., Christiaens, D., Hutter, J., Price, A. N., and Hajnal, J. V., Complex diffusion-weighted image estimation via matrix recovery under general noise models. Neuroimage. 2019.
Bastiani, M., Andersson, J. L. R., Cordero-Grande, L., Murgasova, M., Hutter, J., Price, A. N., Makropoulos, A., Fitzgibbon, S. P., Hughes, E., Rueckert, D., Victor, S., Rutherford, M., Edwards, A. D., Smith, S. M., Tournier, J-D., Hajnal, J. V., Jbabdi, S., and Sotiropoulos. S. N., Automated processing pipeline for neonatal diffusion MRI in the developing Human Connectome Project. Neuroimage. 2019.
Teixeira, R. P. A.G., Malik, S. J., and Hajnal, J. V, Fast quantitative MRI using controlled saturation magnetization transfer. Magnetic Resonance in Medicine. 2019.
Pietsch, M., Christiaens, D., Hutter, J., Cordero-Grande, L., Price, A. N., Hughes, E., Edwards, A. D, Hajnal, J. V., Counsell, S. J., and Tournier.,J-D. A framework for multi-component analysis of diffusion MRI data over the neonatal period. Neuroimage. 2019.

2018

Hutter, J., Slator, P.J, Jackson, L., Dos Santos Gomes, A., Ho,A., Story, L., O’Muircheartaigh, J., Teixeira, R. P. A. G. T., Chappell, L. C., Alexander, D.C., Rutherford, M.A., Hajnal, J.V., Multi‐modal functional MRI to explore placental function over gestation. Magnetic Resonance in Medicine. 2018.
Bozek, J., Makropoulos, A., Schuh, A., Fitzgibbon, S., Wright, R., Glasser, M. F., Coalson, T. S., O’Muircheartaigh, J., Hutter, J., Price, A. N., Cordero-Grande, L., Teixeira R. P. A. G., Hughes, E., Tusor, N., Baruteau, K. P., Rutherford, M. A., Edwards, A. D., Hajnal, J. V., Smith, S. M., Rueckert. D., Jenkinson, M., Robinson, E. C,. Construction of a neonatal cortical surface atlas using Multimodal Surface Matching in the Developing Human Connectome Project. Neuroimage. 2018.
Pietsch, M., Christiaens, D., Hutter, J., Cordero-Grande, L., Price, A.N., Hughes, E., Edwards, A.D., Hajnal, J.V., Counsell, S.J., Tournier, J.D., A framework for multi-component analysis of diffusion MRI data over the neonatal period. Neuroimage. 2019.
Teixeira, R.P. A.G., Malik, S.J., Hajnal, J.V., Fast quantitative MRI using controlled saturation magnetization transfer. Magnetic Resonance in Medicine. 2019.
Christiaens, D., Cordero-Grande,L., Hutter, J., Price, A.N., Deprez, M., Hajnal, J.V., Tournier, J.D., Learning compact q-space representations for multi-shell diffusion-weighted MRI. IEEE Transactions on Medical Imaging. 2018.
Jana Hutter , Paddy J. Slator , Daan Christiaens , Rui Pedro A. G. Teixeira , Thomas Roberts , Laurence Jackson , Anthony N. Price , Shaihan Malik , Joseph V. Hajnal.
Integrated and efficient diffusion-relaxometry using ZEBRA. Nature Scientific Reports. 2018.
Fitzgibbon, S., Andersson, J., Harrison, S., Robinson, E., Bozek, J., Makropoulos, A., Bastiani, M., Griffanti, L., Wright, R., Schuh, A., Hughes, E., O’Muircheartaigh, J., Arichi, T., Ciarrusta, J., Gomes, A., Allsop, J., Steinweg, J., Tusor, N., Wurie, J., Victor, S., Price, A., Cordero-Grande, L., Hutter, J., Beckmann, C., Hajnal, J., Rueckert, D., Edwards, D., Smith, S., Jenkinson, M., Duff, E., 2018. The developing Human Connectome Project automated functional processing framework for neonates. OHBM.
Fitzgibbon, SP, Duff, EP, Jenkinson, M, Bastiani, M, Hajnal, JV, Edwards, D, Smith, S, Andersson, J. (2018). Correction of intra-volume movement and motion-by-susceptibility distortion in fMRI. 24th annual meeting of the British Chapter of the ISMRM, Oxford, UK, September 2018
E. C. Robinson, K. Garcia, M. F. Glasser, Z. Chen, T. S. Coalson, A. Makropoulos, J. Bozek, R. Wright, A. Schuh, M. Webster, J. Hutter, A. Price, L. Cordero Grande, E. Hughes, N. Tusor, P. V. Bayly, D. C. Van Essen, S. M. Smith, A. D. Edwards, J. Hajnal, M. Jenkinson, B. Glocker and D. Rueckert. Multimodal surface matching with higher-order smoothness constraints. NeuroImage, 167:453-465, 2018.
A. Makropoulos, S. J. Counsell, D. Rueckert. A review on automatic fetal and neonatal brain MRI segmentation, NeuroImage, in press, 2018.
K. E. Garcia, E. C. Robinson, D. Alexopoulos, D. Dierker, M. F. Glasser, T. Coalson, C. Ortinau, D. Rueckert, L. A. Taber, D. C. Van Essen, C. E. Rogers, C. D. Smyser and P. V. Bayly. Dynamic patterns of cortical expansion during folding of the preterm human brain. Proceedings of the National Academy of Sciences (PNAS), in press, 2018.
The developing human connectome project: A minimal processing pipeline for neonatal cortical surface reconstruction. A. Makropoulos, E. C. Robinson, A. Schuh, R. Wright, S. Fitzgibbon, J. Bozek, S. J. Counsell, J. Steinweg, K. Vecchiato, J. Passerat-Palmbach, G. Lenz, F. Mortari, T. Tenev, E. P. Duff, M. Bastiani, L. Cordero-Grande, E. Hughes, N. Tusor, J.-D. Tournier, J. Hutter, A. N. Price, R. Pedro, A. G. Teixeira, M. Murgasova, S. Victor, C. Kelly, M. A. Rutherford, S. M. Smith, A. D. Edwards, J. V. Hajnal, M. Jenkinson and D. Rueckert. NeuroImage, in press, 2018.
Cordero-Grande, E. J. Hughes, J. Hutter, A. N. Price, J. V. Hajnal. Three-dimensional motion corrected sensitivity encoding reconstruction for multi-shot multi-slice MRI: Application to neonatal brain imaging. Magnetic Resonance in Medicine, 2018; 79(3): 1365-1376.
J. Hutter, J. Donald Tournier, A. N. Price, L. Cordero-Grande, E. J. Hughes, S. Malik, J. Steinweg, M. Bastiani, S.N. Sotiropoulos, S. Jbabdi, J. Andersson, A.D. Edwards, J.V. Hajnal. Time-efficient and flexible design of optimized multishell HARDI diffusion. Magnetic Resonance in Medicine, 2018; 79(3): 1276-1292.

2017

G. Ferrazzi, A.N. Price,R.P. A.G. Teixeira, L. Cordero-Grande, J. Hutter, A.Gomes, F. Padormo, E. Hughes, T. Schneider, M.Rutherford, Ma. Kuklisova Murgasova, J.V. Hajnal. An efficient sequence for fetal brain imaging at 3T with enhanced T1 contrast and motion robustness. Magnetic Resonance in Medicine, 2017.
M. Bastiani,, J. Andersson, L. Cordero-Grande, M. Murgasova, J. Hutter, A. Price, A. Makropoulos, S.P. Fitzgibbon, E.P. Duff, E. Hughes, A. Santos Gomes, J. Allsop, J. Steinweg, N. Tusor, J. Wurie, J. BuenoConde, D. Rueckert, A.D. Edwards, S. Smith, J-D Tournier, J.V. Hajnal, S. Jbabdi, S. Sotiropoulos. The developing Human Connectome: automated processing pipeline and quality control for neonatal dMRI. OHBM 2017.
E. Hughes, L. CorderoGrande, M. Murgasova, J. Hutter, A. Price, A. Santos Gomes, J. Allsop, J. Steinweg, N. Tusor, J. Wurie, J. BuenoConde, J-D Tournier, M. Abaei, S. Counsell, M. Rutherford, M. Pietsch, D. Edwards, J. Hajnal, S. Fitzgibbon, E. Duff, M. Bastiani, J. Andersson, S. Jbabdi, S. Sotiropoulos, M. Jenkinson, S. Smith, S.l Harrison, L. Griffanti, R. Wright, J. Bozek, C. Beckmann, A. Makropoulos, E. Robinson, A. Schuh, J. Passerat Palmbach, G. Lenz, F. Mortari, T. Tenev, D. Rueckert. The Developing Human Connectome: announcing the first release of open access neonatal brain imaging. OHBM 2017.
S. Fitzgibbon, J. Andersson, S. Harrison, E. Robinson, J. Bozek, A. Makropoulos, M. Bastiani, L. Griffanti, R. Wright, A. Schuh, E. Hughes, J. O’Muircheartaigh, A. Gomes, J. Allsop, J. Steinweg, N. Tusor, J. Wurie, J. Bueno-Conde, M. Abaei, A.Price, L. Cordero-Grande, Jana Hutter, C. Beckmann, J Hajnal, D. Rueckert, D. Edwards, S. Smith, M. Jenkinson, E. Duff. The developing Human Connectome Project automated functional pre-processing pipeline for neonates. OHBM 2017.
J. Hutter, A. N. Price, L. Cordero-Grande, S. Malik, G. Ferrazzi, A. Gaspar, E. J. Hughes, D. Christiaens, L. T. M. A. Rutherford, Joseph V. Hajnal. Quiet echo planar imaging for functional and diffusion MRI. Magnetic Resonance in Medicine, 2017.
L. Cordero-Grande, E. J. Hughes, J. Hutter, A. N. Price, J. V. Hajnal. Three-dimensional motion corrected sensitivity encoding reconstruction for multi-shot multi-slice MRI: Application to neonatal brain imaging. Magnetic Resonance in Medicine, 2017.
J. Hutter, J. Donald Tournier, A. N. Price, L. Cordero-Grande, E. J. Hughes, S. Malik, J. Steinweg, M. Bastiani, S.N. Sotiropoulos, S. Jbabdi, J. Andersson, A.D. Edwards, J.V. Hajnal. Time-efficient and flexible design of optimized multishell HARDI diffusion. Magnetic Resonance in Medicine, 2017.
S. Arslan, S. Ira Ktena, A. Makropoulos, E. C. Robinson, D. Rueckert, S. Parisot. Human brain mapping: A systematic comparison of parcellation methods for the human cerebral cortex. NeuroImage, 2017.
D. Christiaens , J-D. Tournier , M. Kuklisova-Murgasova , J. V. Hajnal. Compact representation of the diffusion signal for multi-shell HARDI. ISMRM 2017.
E.J. Hughes, O. Carney, N. Tusor, K. Pegoretti, S. Arulkumaran, C. Kelly, L. Cordeo-Grande, M. Barnett, M. Krishnan, J. Steinweg, J. Allsop, A. Gomes Dos Santos, M. Fox, J. Wuire, J. Bueno Conde, A. Strang, M. Sharma, S. Victor, S.J. Counsell, A.D. Edwards, J.V.Hajnal, M.A. Rutherford. The type and prevalence of incidental findings on magnetic resonance imaging of the low risk term born neonatal brain. ISMRM 2017.
L. Cordero-Grande , G. Ferrazzi , R.P. A.G Teixeira , H. Shahzad , A.N. Price , J.V. Hajnal. Motion correction in volumetric brain imaging based on DISORDER: Distributed and Incoherent Sample Orders for Reconstruction Disentanglement using Encoding Redundancy. ISMRM 2017.
M. Bastiani , J. Andersson , L. Cordero-Grande , M. Murgasova , J. Hutter , A. N. Price , A. Makropoulos , E. Hughes , J. Steinweg , N. Tusor , D. Rueckert , A. D. Edwards , S. Smith , J-D. Tournier , J. V. Hajnal , S. Jbabdi , and S. Sotiropoulos. Automated pre-processing pipeline and quality control for neonatal diffusion MRI in the developing Human Connectome Project (dHCP). ISMRM 2017.
M. Pietsch , J. Hutter , A.N. Price , M. Kuklisova Murgasova , E. Hughes , J. Steinweg , N. Tusor , J. Andersson , M. Bastiani , S. Sotiropoulos , J. V. Hajnal , and J-D. Tournier. Multi-shell neonatal brain HARDI template. ISMRM 2017.

2016

A.N. Price, J. Hutter, L. Cordero Grande, E. Hughes, K. Pegoretti, A.O. Gaspar, L. McCabe, M. Rutherford, J.V. Hajnal. Multiplexed Multiband EPI for Increased Efficiency in Fetal FMRI and DMRI. ISMRM 2016.
A.N. Price, S. Malik, J. Hutter, M. Bührer, L. Cordero-Grande, R. Teixeira, E. Hughes, M. Rutherford, J.V. Hajnal. Multiband TSE Imaging of the Fetal Brain at 3T. ISMRM 2016.
A.O. Gaspar, G. Ferrazzi, R. Nunes, E. Hughes, S. Malik, L. McCabe, K. Pegoretti, M. Rutherford, J.V. Hajnal, A. Price. Improving Functional Imaging of the Fetal Brain Using Constrained Image-Based Shimming to Suppress Maternal Fat. ISMRM 2016.
E. Hughes, A.N. Price, L. McCabe, K. Pegoretti Baruteau, J. Hutter, O. Carney, A.O. Gaspar, J.V. Hajnal, M. Rutherford. Magnetic Resonance Imaging quantification of Venous Return in Pregnant Women: A Comparison Between Supine and Left Lateral Tilt Position. ISMRM 2016.
E.J. Hughes, T. Winchman, F. Padormo, R. Teixeira, J. Wurie, M. Sharma, M. Fox, J. Hutter, L. Cordero-Grande, A.N. Price, J. Allsop, J. Bueno-Conde, N. Tusor, T. Arichi, A.D. Edwards, M.A. Rutherford, S.J. Counsell, J.V. Hajnal. A dedicated neonatal brain imaging system. Magnetic Resonance in Medicine 2016.
G. Ferrazzi, R.P. A. G. Teixeira, J. Hutter, L. Cordero-Grande, E. Hughes, A.N. Price, J.V. Hajnal. Revisited Multislice Distributed Inversion Recovery Towards an Efficient Neonatal MR Examination. ISMRM 2016.
J. Bozek, M. Bastiani, A. Makropoulos, R. Wright, A. Schuh, S. Fitzgibbon, J. Hutter, A. Price, L. Cordero Grande, E. Hughes, N. Tusor, A.D. Edwards, J.V. Hajnal, S. Smith, D. Rueckert, M. Jenkinson, E. Robinson: In Vivo Cortical Myelination of the Neonatal Brain in the Developing Human Connectome Project. OHBM 2016.
J. Bozek, S. Fitzgibbon, R. Wright, D. Rueckert, M. Jenkinson, E. Robinson: Construction of a Neonatal Cortical Surface Atlas Using Multimodal Surface Matching. IEEE International Symposium on Biomedical Imaging: From Nano to Macro 2016.
J. Hutter, A.N. Price, L. Cordero Grande, E. Hughes, K. Pegoretti, A. O. Gaspar, L. McCabe, M. Rutherford, J.V. Hajnal. Quiet EPI (QuEPI) for Single-Shot Spin and Gradient Echo EPI Sequences for Efficient Fetal Imaging. ISMRM 2016.
J. Hutter, J-D Tournier, A.N. Price, L. Cordero Grande, E. Hughes, K. Pegoretti, L. McCabe, M. Rutherford, J.V. Hajnal. Efficient Quiet Multiband Accelerated HARDI Fetal Diffusion. ISMRM 2016.
L. Cordero-Grande, A. Price, J. Hutter, E. Hughes and J. V. Hajnal. Comprehensive CG-SENSE reconstruction of SMS-EPI. ISMRM 2016.
L. Cordero-Grande, E. Hughes, A. Price, J. Hutter, A.D. Edwards and J.V. Hajnal. 3D motion corrected SENSE reconstruction for multishot multislice MRI. ISMRM 2016.
L. Cordero-Grande, J. Hutter, A. Price, E. Hughes and J.V. Hajnal. Goodness of fit factor in SENSE reconstruction- a tool for pseudolesion detection and fat unfolding. ESMRMB 2016.
L. Cordero-Grande, R.P.A.G. Teixeira, E.J. Hughes, J. Hutter, A.N. Price and J.V. Hajnal. Sensitivity encoding for aligned multishot magnetic resonance reconstruction. IEEE Transactions on Computational Imaging, 2, 266–280, 2016.
M. Abaei, T. Arichi, A.N. Price, E. Duff, E. Hughes, G. Ferrazzi, J-D Tournier, J. O’Muircheartaigh, S. Counsell, A.D. Edwards, S. Smith, D. Rueckert, J.V. Hajnal. A Brain Resting State Network Specific T2* Study in Neonatal Infants. ISMRM 2016.
P. Fitzgibbon, M. Jenkinson, E. Robinson, J. Bozek, L. Griffanti, A. Makropoulos, R. Wright, A. Schuh, E. Hughes, M. Abei, A. Price, L. Cordero Grande, J. Hutter, N. Tusor, C.F. Beckmann, J.V. Hajnal, D. Rueckert, A.D. Edwards, S. Smith, E.P. Duff. The developing Human Connectome Project (dHCP): minimal functional preprocessing pipeline for neonates. Resting State and Brain Connectivity 2016.
S. Arslan, S. Parisot, and D. Rueckert. Boundary Mapping through Manifold Learning for Connectivity-Based Cortical Parcellation. MICCAI 2016.
S. Parisot and D. Rueckert: A Cortical Parcellation Framework for Multimodal Analysis. OHBM 2016.
S. Parisot, B. Glocker, M.D. Schirmer, D. Rueckert: GraMPa: Graph-based multi-modal parcellation of the cortex using fusion moves. MICCAI 2016
S. Parisot, S. Arslan, J. Passerat-Palmbach, W.M. Wells III, D. Ruecker. Group-wise parcellation of the cortex through multi-scale spectral clustering. NeuroImage 136 (2016) 68-83.

2015

A.N. Price, L. Cordero-Grande, S.J. Malik, M. Abaei, T. Arichi, E.J. Hughes, D. Rueckert, A.D. Edwards and J.V. Hajnal. Accelerated Neonatal fMRI using Multiband EPI. ISMRM 2015.
E. Hughes, T. Winchman, L. Mager, J. Wurie, M. Sharma, M. Fox, J. Allsop, F. Padormo, T. Arichi, N. Tusor, C. Kelly, M. Barnett, A. Kapetanakis, M. Krishnan, A. Price, R.P.A.G. Teixeira, A. Bequiri, J. Hutter, M. Rutherford, S. Counsell, D. Edwards, J. Hajnal. A dedicated neonatal magnetic resonance brain imaging system. ESMRMB 2015.
G. Ferrazzi, A.N. Price, J. Hutter, E.J. Hughes, M.J. Fox, J. Allsop, M.A. Rutherford, J.V. Hajnal. An investigation of Multi-Band imaging for rs-fMRI in the fetus. ESMRMB 2015
G. Ferrazzi, R.G. Nunes, T. Arichi, M. Abaei, E. Hughes, A. Price and J.V. Hajnal. An exploration of task based fMRI in neonates using echo-shifting to allow acquisition at longer TE without loss of temporal efficiency. ISMRM 2015.
J. Hutter, AN. Price, L. Cordero-Grande, EJ. Hughes, J-D. Tournier. D. Batalle, SJ. Counsell, AD. Edwards, JV. Hajnal. Multi-band accelerated multi-shell HARDI neonatal diffusion for the developing Human Connectome Project. ISMRM 2015
J. Hutter, J-D. Tournier, E. J. Hughes, A. N. Price, L. Cordero-Grande, R. G. Nunes, R.P. A. G. Teixeira, S. J. Counsell, J. L. R. Andersson, D. Rueckert, A. D. Edwards and J. V. Hajnal. Optimized multi-shell HARDI acquisiton with alternating phase encoding directions for neonatal dMRI. ISMRM 2015.
J.-D. Tournier, E. Hughes, N. Tusor, A.D. Edwards and J.V Hajnal. Optimisation of single-shell HARDI for neonatal imaging. ISMRM 2015.
J.-D. Tournier, E. Hughes, N. Tusor, S.N. Sotiropoulos, S. Jbabdi, J. Andersson, D. Rueckert, A.D. Edwards, J.V Hajnal. Data-driven optimisation of multi-shell HARDI. ISMRM 2015.
K. Pannek, J. George, R. Boyd, P. Colditz, S. Rose and D. Rueckert. Combined slicewise and voxelwise outlier detection in diffusion MRI data of preterm born infants. OHBM 2015.
L. Cordero-Grande, E. Hughes, R.P.A.G. Teixeira and J.V. Hajnal. Parallel imaging for motion correction in neonatal brain MR reconstruction. ISMRM 2015
L. Cordero-Grande, E.J. Hughes, R.P.A.G. Teixeira, A.N. Price, A.D. Edwards and J. V. Hajnal. Fully 3D motion corrected parallel imaging reconstruction of multishot multislice MR. ESMRMB 2015.
R. Reuillon, M. Leclaire and J. Passerat-Palmbach. Model Exploration Using OpenMOLE – a workflow engine for large scale distributed design of experiments and parameter tuning. IEEE High Performance Computing and Simulation 2015.
R. Wright, A. Makropoulos, V. Kyriakopoulou, P.A. Patkee, L.M. Koch, M.A. Rutherford, J.V. Hajnal, D. Rueckert and P. Aljabar. Construction of a fetal spatio-temporal cortical surface atlas from in utero MRI: Application of spectral surface matching. NeuroImage 120 (2015) 467–480.
R.G. Nunes, G. Ferrazzi, A. Price, M. Fox, C. Malamateniou, M. Rutherford and J.V. Hajnal. Combined Echo Volumar Imaging (EVI) and Localized Excitation for Motion Insensitive Fetal fMRI. ISMRM 2015.
S. Arslan and D. Rueckert. Multi-Level Parcellation of the Cerebral Cortex Using Resting-State fMRI. MICCAI 2015.
S. Arslan, S. Parisot and D. Rueckert. How to Represent Sub-regions in a Parcellated Brain for fMRI Analyses?. OHBM 2015.
S. Arslan, S. Parisot and D. Rueckert. Joint Spectral Decomposition for the Parcellation of the Human Cerebral Cortex Using Resting-state fMRI. IPMI 2015.
S. Arslan, S. Parisot and D. Rueckert. Supervertex Clustering of the Human Cerebral Cortex using Resting-state fMRI. OHBM 2015.
S. Parisot and D. Rueckert. Multi-Scale Spectral Parcellation of the Cortex Based on Structural Connectivity. OHBM 2015.
S. Parisot, and D. Rueckert. Evaluation Methods for Diffusion-driven Cortex Parcellation, OHBM 2015.
S. Parisot, M. Rajchl, J. Passerat-Palmbach and D. Rueckert. A Continuous Flow-Maximisation Approach to Connectivity-driven Cortical Parcellation. MICCAI 2015.
S. Parisot, S. Arslan, J. Passerat-Palmbach, D. Rueckert. Tractography-driven Groupwise Multi-Scale Parcellation of the Cortex. IPMI 2015.

2014

J. Passerat-Palmbach, M. Leclaire, R. Reuillon, Z. Wang, D. Rueckert. OpenMOLE: a Workflow Engine for Distributed Medical Image Analysis. International Workshop on High Performance Computing for Biomedical Image Analysis. MICCAI, 2014.
L. Cordero-Grande, E. Hughes, R. P. A. G. Teixeira, A. Price and J. V. Hajnal. Parallel imaging for aligned multi-shot MR reconstruction. Workshop on Intelligent Imaging: Linking MR Acquisition and Processing. MICCAI 2014.